LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200b-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-200b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
256183-256200
0.013
0
8mer
86931-86953
0.007
1
7mer
115594-115611
0.007
1
7mer
187639-187661
0.006
2
7mer
162919-162943
0.005
1
8mer
244287-244302
0.005
1
7mer
167276-167299
0.005
1
7mer
135816-135826
0.005
1
7mer
84858-84872
0.005
3
7mer
49673-49699
0.005
1
7mer
173551-173573
0.005
1
7mer
8566-8585
0.005
3
7mer
171412-171429
0.005
0
8mer
114284-114310
0.005
1
7mer
95704-95724
0.004
1
7mer
232562-232584
0.004
0
7mer
36151-36168
0.004
0
7mer
69876-69895
0.004
0
8mer
75968-75982
0.004
Not Conserved
7mer
106174-106201
0.004
0
7mer
148765-148777
0.004
2
7mer
31829-31855
0.004
2
7mer
31213-31231
0.003
0
8mer
13642-13660
0.003
0
7mer
244462-244482
0.003
1
6mer
131790-131804
0.003
8
7mer
106517-106537
0.003
Not Conserved
7mer
201601-201625
0.003
0
7mer
22657-22675
0.003
2
7mer
111787-111803
0.003
0
7mer
82226-82246
0.003
0
8mer
205301-205309
0.003
0
7mer
106530-106554
0.003
1
7mer
171492-171507
0.003
0
6mer
7949-7961
0.003
3
6mer
155321-155341
0.003
1
7mer
161654-161678
0.002
3
7mer
244252-244271
0.002
Not Conserved
6mer
91097-91110
0.002
4
6mer
178938-178956
0.002
2
6mer
98369-98391
0.002
4
6mer
46386-46408
0.002
1
6mer
146249-146275
0.002
1
6mer
172984-172997
0.002
0
6mer
71187-71202
0.002
1
6mer
50582-50599
0.002
1
6mer
150712-150729
0.002
1
6mer
64547-64574
0.002
2
6mer
21744-21755
0.002
1
6mer
94476-94499
0.002
2
6mer
34039-34059
0.002
1
6mer
145931-145953
0.002
Not Conserved
6mer
18645-18672
0.002
1
6mer
198056-198076
0.002
0
6mer
161090-161115
0.002
1
6mer
3757-3777
0.002
1
6mer
89958-89968
0.002
1
6mer
248810-248834
0.002
0
6mer
8761-8788
0.002
0
6mer
90366-90388
0.002
1
8mer+wobble
42516-42533
0.002
0
6mer
70390-70414
0.002
1
6mer
108646-108667
0.002
0
6mer
167502-167514
0.002
1
6mer
47475-47497
0.002
1
6mer
36593-36616
0.002
0
6mer
177784-177795
0.002
1
8mer+wobble
53740-53760
0.002
1
6mer
252811-252831
0.002
1
6mer
175738-175757
0.001
1
6mer
57640-57660
0.001
1
6mer
92512-92535
0.001
0
6mer
180797-180820
0.001
0
6mer
18464-18471
0.001
1
6mer
159900-159920
0.001
1
6mer
35731-35751
0.001
3
6mer
55557-55569
0.001
2
6mer
64301-64320
0.001
0
6mer
76478-76497
0.001
0
6mer
16285-16304
0.001
1
6mer
146674-146678
0.001
Not Conserved
6mer
8250-8274
0.001
2
6mer
17662-17676
0.001
0
6mer
20872-20893
0.001
0
6mer
200202-200222
0.001
0
6mer
147298-147319
0.001
1
6mer
175513-175530
0.001
2
6mer
106025-106051
0.001
1
6mer
79338-79364
0.001
1
6mer
219209-219234
0.001
Not Conserved
6mer
2797-2814
0.001
0
6mer
51281-51302
0.001
0
6mer
18489-18507
0.001
0
6mer
83942-83958
0.001
0
6mer
76513-76526
0.001
1
6mer
151767-151787
0.001
0
6mer
79403-79417
0.001
1
XLOC_014147
hsa-miR-200b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029754
Biotype: transcript isomorph
Gene id: XLOC_014147
Gene Name: XLOC_014147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
680-706
0.190
0
XLOC_010383
hsa-miR-200b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021785
Biotype: transcript isomorph
Gene id: XLOC_010383
Gene Name: XLOC_010383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
609-628
0.144
0
6mer
404-424
0.010
0
XLOC_006092
hsa-miR-200b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014132
Biotype: transcript isomorph
Gene id: XLOC_006092
Gene Name: XLOC_006092
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-259
0.139
1
RP11-340I6.7
hsa-miR-200b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000600182
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-164
0.139
0
RP11-923I11.8
hsa-miR-200b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618634
Biotype: antisense
Gene id: ENSG00000278451
Gene Name: RP11-923I11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-40
0.112
11
7mer
37-55
0.026
7
RP11-340I6.7
hsa-miR-200b-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000596569
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-217
0.131
0
XLOC_003450
hsa-miR-200b-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007980
Biotype: transcript isomorph
Gene id: XLOC_003450
Gene Name: XLOC_003450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-246
0.126
0
RP11-691G17.1
hsa-miR-200b-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2173-2194
0.100
1
6mer
1115-1127
0.003
0
KIAA0087
hsa-miR-200b-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-69
0.094
8
6mer
553-563
0.005
4
6mer
3402-3424
0.003
1
XLOC_001401
hsa-miR-200b-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1320-1343
0.078
0
6mer
1921-1931
0.013
0
XLOC_008328
hsa-miR-200b-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
950-967
0.089
0
RP13-39P12.3
hsa-miR-200b-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601701
Biotype: antisense
Gene id: ENSG00000228748
Gene Name: RP13-39P12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-556
0.086
6
FLJ22763
hsa-miR-200b-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000612064
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-103
0.085
4
RP11-474P2.6
hsa-miR-200b-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621248
Biotype: lincRNA
Gene id: ENSG00000275481
Gene Name: RP11-474P2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2983-3007
0.074
5
7mer
2559-2582
0.011
1
RP11-262H14.3
hsa-miR-200b-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438699
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-215
0.059
0
7mer
418-435
0.024
0
RP11-434B12.1
hsa-miR-200b-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000569008
Biotype: lincRNA
Gene id: ENSG00000260837
Gene Name: RP11-434B12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-71
0.059
1
8mer
934-949
0.021
1
6mer
816-841
0.003
0
RP11-66H6.4
hsa-miR-200b-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000615581
Biotype: sense_intronic
Gene id: ENSG00000274038
Gene Name: RP11-66H6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-447
0.069
5
6mer
127-148
0.006
2
XLOC_002102
hsa-miR-200b-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004261
Biotype: transcript isomorph
Gene id: XLOC_002102
Gene Name: XLOC_002102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-83
0.075
1
AC006548.28
hsa-miR-200b-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200b-3p
Sequence: uaauacugccugguaaugauga
MirBase ID: MIMAT0000318
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-251
0.019
1
8mer
64726-64742
0.007
1
7mer
28702-28716
0.004
1
7mer
10420-10436
0.003
2
7mer
77796-77807
0.003
0
7mer
7522-7537
0.003
1
7mer
54349-54372
0.002
Not Conserved
6mer
19023-19048
0.002
3
6mer
32355-32375
0.002
1
6mer
923-942
0.002
0
8mer
78605-78622
0.002
Not Conserved
6mer
54774-54790
0.002
0
6mer
77400-77425
0.002
0
6mer
53947-53973
0.002
Not Conserved
6mer
30729-30755
0.002
1
6mer
80205-80223
0.002
0
6mer
31661-31683
0.002
1
6mer
30960-30978
0.002
0
6mer
44881-44906
0.002
1
6mer
68727-68753
0.001
0
6mer
73521-73539
0.001
0
6mer
79846-79872
0.001
0
6mer
67475-67493
0.001
0
6mer
27500-27526
0.001
Not Conserved
6mer
65959-65981
0.001
Not Conserved
6mer
67564-67582
0.001
Not Conserved
6mer
27414-27432
0.000
0
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